Recipes

Recipes

• 1. Recipe 1: Kmers parsing and counting
  • 1.1. Data
  • 1.2. Description
  • 1.3. Implementation
  • 1.4. Complete Script
• 2. Recipe 2: Loading a kDataFrame file from disk
  • 2.1. Implementation
  • 2.2. Complete Script
• 3. Recipe 3: Play with kDataFrame
  • 3.1. Description
  • 3.2. Implementation
  • 3.3. Insert the first kmer and set count to 1 & the second kmer with count 10
  • 3.4. Complete Script
• 4. Recipe 4: Itaration on kDataFrame kmers
  • 4.1. Description
  • 4.2. Implementation
  • 4.3. Complete Script
  • 4.4. Output CSV
• 5. Recipe 5: Kmers Indexing
  • 5.1. Description
  • 5.2. Implementation
  • 5.3. Get a kmer color from the coloredKDataFrame
  • 5.4. Get all the transcripts IDs associated to the previous color
  • 5.5. Complete Script
• 6. Recipe 6: Set functions
  • 6.1. Description
  • 6.2. Implementation